Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015924834.1_cds_XP_016473141.1_65304
CDS Infomation

[gene=LOC107795081] [db_xref=GeneID:107795081] [protein=transcription factor PIF3-like isoform X3] [protein_id=XP_016473141.1] [location=join(34270..34358,34484..35636,35731..35835,37111..37176,37267..37782,39092..39256)] [gbkey=CDS]
Sequence

ATGCCTCTCTCTGAGTTTTTGAAAATGGCTAGAGGGAAGCTTGAATCTGGCCAGCAGAAA
ATCTCATCTACAACTCATCTCTCTTCTTTTCCTGAGAATGAATTGGTTGAGCTTGTATGG
GAAAATGGTCAGATTATGATGCAAGGCCAGTCCAGTAGTGCTAAGAAGAACCCTATTCCT
AATAAACTTCCATCAAATGCCTCAAAGATTGGGAAGTTTGGTGTGATGGACCCAATGTTG
AATGATATGCCATTATCTGTGCCCATTGGTGAACTGGATTTGATTCAAGAGGATGAAGGG
GTGCCTTGGTTAGGTTATGCAGCAGATGATAGTCTTCAACAAGATTATTGTTCTCAGTTT
TTGCCTGAAATATCTGGTTTGACGACGAATGAACCAGCCGGACAGAGTGAATTTGGTTTA
ATAAATAAGAGAGGTAGTTCCGATAAGATGATTAGGGATTCACAGAGTGTTCCTATACAT
AATGCTGTGAATTTTGATCAAAGAAAGGTTTCTCCTTCTTCCAAATTTAGCCTGTTATGT
TCATTGGCACCTCAGAAAGGTCATGCGTCAATTCCATCCCTAGGACCAGGAGTTTCAGAT
ATCTTTAGCAGTAAAACTAGCAATAATTCTGTGTCTGTTTTGGGGGATTCAAATCAAAGT
CAAGTTTCAGCTGGTGATGTTAAAAGCGTTAAAATCCAAAAGCAAAATATGCCTGGAAGT
TGCTCCAGCTTGCTGAACTTCTCGCATTTCTCAAGACCTGCTACATTTGTTAAAGCAACT
AAGCTTCAAAATATTACTGGGGTCTTAGCCTCAGATTCATCTGCCTTAGAAGCAAAGGGA
TGTAAAGAAGGAGAAAATGTGACAAATAGCCACAATCATGTTAATGCTGCAGCAGTTGAA
GACTATTTAAGTTTCAAGAAGGAAAGTGGCCTCCAATATCCAACTAGTGCCGTACCTTCT
CAACGCGAGTCAAGAGCATCTGGGGCTAGCTTTCATGATAGATCATCTCGTGTCGAACAG
TCTGATAATGTATTCAGAGAGAGTAATAGTGACAATACTCCTGGTCAGTTTACTGGTGCA
AAAGCAACGACAGATACAGCTGATGGTGAGGGAAATGCTGAACATGGGGTTGTTTGCTCA
TCTGTATGCTCTGGTAGCAGTGCAGAGAGAGGATCAAGTGATCAGCCTCATAATCTAAAG
AGGAAATCCCGTGATAATGAGGATTCCGGGTGTCCAAGTGAAGATGTTGAAGAAGAATCT
GTTGGTGTAAAAAAAAGTTGCCCTACTCGAGGAGGTACAGGTTCAAAGAGAAGCCGAGCT
GCAGAGGTGCATAATTTATCTGAGCGGGCGGATAAAGCTTCAATGCTTGATGAAGCTATT
GAATATTTGAAGACACTTCAACTGCAAGTACAGATAATGTCTATGGGAGCAGGGTTTTGT
GTCCCGCCAATGATGTTTCCTGCTGGAGTGCAGCACATGCATGCTGCTCAAATGCCACAT
TTCTCTCCAATGGGTTTAGGGATGGGTATGGGAATGGGGATGGGCTATGGAATGGGTATG
CTTGAGATGAATGGTAGATCCTCTGGCTGCCCTATTTTTCCAATCCCCTCTGTTCAAGGA
TCGCATTTTCCGTCACCTCCAATTCCTGCCTCTGCTGCTTATCCAGGAATAGCTGTATCT
AATCGTCATGCCTTTGCACATCCTGGTCAAGGACTTCCCATGCCAATCCCACGACCATCT
TTGGCTCCTTTGGCAGGGCAAGCATCAACTGGTGCTGCTGTCCCTTTGAACGTTGCAAGG
GTAGGAGTTTCAGTGGATAGACCGAGTGTACCACCGATTTTGGATTCCAAGAATCCAGTA
CACAAGAAGAACTCACAGATAGTCAATAATGCTGAATGTAGCCTCCCAATAAATCAGACA
TACAGTCAGGTGCAAGCAACAAACGAAGTTCTGGACAAATCAGCTTTGGTGCAAAAAAAT
GATCAACTCCTCGATGGTACTGATAGTGCAGCTAATATCTTGACCAACCAAACAGATGTG
CCAGGAAGTGAAGCGGGTGAGTTTGTTAGAAAAGACACTGCGACATTCAGTTGA

Peptide Sequence

PEP ID

XP_016473141.1
PEP Infomation

PREDICTED: transcription factor PIF3-like isoform X3 [Nicotiana tabacum]
Sequence

MPLSEFLKMARGKLESGQQKISSTTHLSSFPENELVELVWENGQIMMQGQSSSAKKNPIP
NKLPSNASKIGKFGVMDPMLNDMPLSVPIGELDLIQEDEGVPWLGYAADDSLQQDYCSQF
LPEISGLTTNEPAGQSEFGLINKRGSSDKMIRDSQSVPIHNAVNFDQRKVSPSSKFSLLC
SLAPQKGHASIPSLGPGVSDIFSSKTSNNSVSVLGDSNQSQVSAGDVKSVKIQKQNMPGS
CSSLLNFSHFSRPATFVKATKLQNITGVLASDSSALEAKGCKEGENVTNSHNHVNAAAVE
DYLSFKKESGLQYPTSAVPSQRESRASGASFHDRSSRVEQSDNVFRESNSDNTPGQFTGA
KATTDTADGEGNAEHGVVCSSVCSGSSAERGSSDQPHNLKRKSRDNEDSGCPSEDVEEES
VGVKKSCPTRGGTGSKRSRAAEVHNLSERADKASMLDEAIEYLKTLQLQVQIMSMGAGFC
VPPMMFPAGVQHMHAAQMPHFSPMGLGMGMGMGMGYGMGMLEMNGRSSGCPIFPIPSVQG
SHFPSPPIPASAAYPGIAVSNRHAFAHPGQGLPMPIPRPSLAPLAGQASTGAAVPLNVAR
VGVSVDRPSVPPILDSKNPVHKKNSQIVNNAECSLPINQTYSQVQATNEVLDKSALVQKN
DQLLDGTDSAANILTNQTDVPGSEAGEFVRKDTATFS

Transcript Sequence

Gene sequence data has not been registered.